PH01003426G0010's details annotation
1.Annotation
ICBR annotation: FAD binding domain of DNA photolyase domain containing protein, expressed
Blast result AT5G24850 : 0.00E+00
Blast annotation: cryptochrome 3
2.Location
Scaffold: PH01003426
Strand: -
| Region | Start | End |
| gene | 2620 | 6735 |
| mRNA | 2620 | 6735 |
| exon | 2620 | 3421 |
| exon | 3620 | 3669 |
| exon | 3817 | 3940 |
| exon | 4042 | 4111 |
| exon | 4196 | 4271 |
| exon | 4424 | 4500 |
| exon | 4633 | 4679 |
| exon | 4748 | 4939 |
| exon | 5265 | 5483 |
| exon | 5609 | 5748 |
| exon | 5945 | 6735 |
| CDS | 3218 | 3421 |
| CDS | 3620 | 3669 |
| CDS | 3817 | 3940 |
| CDS | 4042 | 4111 |
| CDS | 4196 | 4271 |
| CDS | 4424 | 4500 |
| CDS | 4633 | 4679 |
| CDS | 4748 | 4939 |
| CDS | 5265 | 5483 |
| CDS | 5609 | 5748 |
| CDS | 5945 | 6248 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00875.17 | DNA_photolyase | 51 | 222 |
| PF03441.13 | FAD_binding_7 | 304 | 458 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003913 | DNA photolyase activity |
| GO:0006281 | DNA repair |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.