PH01003426G0020's details annotation
1.Annotation
ICBR annotation: DNA binding protein, putative, expressed
Blast result AT2G19160 : 3.00E-103
Blast annotation: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
2.Location
Scaffold: PH01003426
Strand: -
| Region | Start | End |
| gene | 7044 | 21030 |
| mRNA | 7044 | 21030 |
| exon | 7044 | 7791 |
| exon | 8054 | 8092 |
| exon | 8209 | 8331 |
| exon | 14463 | 14501 |
| exon | 15052 | 15084 |
| exon | 15411 | 15490 |
| exon | 15734 | 15766 |
| exon | 17355 | 17502 |
| exon | 17611 | 17655 |
| exon | 17779 | 17901 |
| exon | 18595 | 18675 |
| exon | 18862 | 18952 |
| exon | 19155 | 19226 |
| exon | 19309 | 19409 |
| exon | 20121 | 20219 |
| exon | 20677 | 21030 |
| CDS | 7663 | 7791 |
| CDS | 8054 | 8092 |
| CDS | 8209 | 8331 |
| CDS | 14463 | 14501 |
| CDS | 15052 | 15084 |
| CDS | 15411 | 15490 |
| CDS | 15734 | 15766 |
| CDS | 17355 | 17502 |
| CDS | 17611 | 17655 |
| CDS | 17779 | 17901 |
| CDS | 18595 | 18675 |
| CDS | 18862 | 18952 |
| CDS | 19155 | 19226 |
| CDS | 19309 | 19409 |
| CDS | 20121 | 20219 |
| CDS | 20677 | 21021 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02485.20 | Branch | 94 | 303 |
| PF02485.20 | Branch | 391 | 470 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008375 | acetylglucosaminyltransferase activity |
| GO:0016020 | membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.