Annotation of co-expression genes

PH01003440G0010's details annotation

1.Annotation

ICBR annotation: pyruvate kinase, putative, expressed

Blast result AT3G22960 : 2.00E-129
Blast annotation: Pyruvate kinase family protein

2.Location

Scaffold: PH01003440
Strand: -

RegionStartEnd
gene966717354
mRNA966717354
exon966710578
exon1065510889
exon1100011243
exon1158811706
exon1195912149
exon1224012327
exon1349613554
exon1359513753
exon1402214280
exon1438614501
exon1511615223
exon1637017354
CDS1024410578
CDS1065510889
CDS1100011243
CDS1158811706
CDS1195912149
CDS1224012327
CDS1349613554
CDS1359513753
CDS1402214280
CDS1438614501
CDS1511615223
CDS1637016802

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00224.20PK388635
PF02887.15PK_C661760

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Glycolysis / Gluconeogenesispyruvate kinase [EC:2.7.1.40]ko00010K00873
Pyruvate metabolismpyruvate kinase [EC:2.7.1.40]ko00620K00873
Carbon fixation in photosynthetic organismspyruvate kinase [EC:2.7.1.40]ko00710K00873
Purine metabolismpyruvate kinase [EC:2.7.1.40]ko00230K00873

10.Gene Ontology

GO AccessionGO Annotation
GO:0000287magnesium ion binding
GO:0003824catalytic activity
GO:0004743pyruvate kinase activity
GO:0006096glycolysis
GO:0030955potassium ion binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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