PH01003453G0010's details annotation
1.Annotation
ICBR annotation: vignain precursor, putative
Blast result AT5G45890 : 3.00E-73
Blast annotation: senescence-associated gene 12
2.Location
Scaffold: PH01003453
Strand: -
| Region | Start | End |
| gene | 7600 | 9696 |
| mRNA | 7600 | 9696 |
| exon | 7600 | 9051 |
| exon | 9145 | 9696 |
| CDS | 8456 | 9051 |
| CDS | 9145 | 9649 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000187 | Biotin_metabolism Fatty_acid_biosynthesis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08246.11 | Inhibitor_I29 | 57 | 116 |
| PF00112.22 | Peptidase_C1 | 151 | 364 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006508 | proteolysis |
| GO:0008234 | cysteine-type peptidase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.