PH01003457G0040's details annotation
1.Annotation
ICBR annotation: protein kinase, putative, expressed
Blast result AT3G44200 : 9.70E-58
Blast annotation: NIMA (never in mitosis, gene A)-related 6
2.Location
Scaffold: PH01003457
Strand: +
| Region | Start | End |
| gene | 17040 | 20945 |
| mRNA | 17040 | 20945 |
| exon | 17040 | 17534 |
| exon | 17614 | 17753 |
| exon | 18480 | 18531 |
| exon | 18620 | 19279 |
| exon | 19358 | 20945 |
| CDS | 17289 | 17534 |
| CDS | 17614 | 17753 |
| CDS | 18480 | 18531 |
| CDS | 18620 | 19279 |
| CDS | 19358 | 20779 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000703 | Elongator holoenzyme complex, NEK (from iTAK) apoplast, lignin catabolic process, regulation of transcription from RNA polymerase II promoter, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.