PH01003472G0080's details annotation
1.Annotation
ICBR annotation: NBS-LRR disease resistance protein, putative, expressed
Blast result AT1G69550 : 1.60E-26
Blast annotation: disease resistance protein (TIR-NBS-LRR class)
2.Location
Scaffold: PH01003472
Strand: +
| Region | Start | End |
| gene | 51950 | 54881 |
| mRNA | 51950 | 54881 |
| exon | 51950 | 52465 |
| exon | 52573 | 53736 |
| exon | 53858 | 54361 |
| exon | 54480 | 54881 |
| CDS | 52064 | 52465 |
| CDS | 52573 | 53736 |
| CDS | 53858 | 54361 |
| CDS | 54480 | 54494 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00560.32 | LRR_1 | 63 | 82 |
| PF13516.5 | LRR_6 | 147 | 160 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.