PH01003480G0140's details annotation
1.Annotation
ICBR annotation: mitochondrial import inner membrane translocase subunit Tim, putative
Blast result AT5G50810 : 1.70E-17
Blast annotation: translocase inner membrane subunit 8
2.Location
Scaffold: PH01003480
Strand: -
| Region | Start | End |
| gene | 63551 | 67333 |
| mRNA | 63551 | 67333 |
| exon | 63551 | 64104 |
| exon | 64326 | 64370 |
| exon | 64965 | 65036 |
| exon | 65838 | 67333 |
| CDS | 63916 | 64104 |
| CDS | 64326 | 64370 |
| CDS | 64965 | 65036 |
| CDS | 65838 | 65888 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000459 | CMGC_CDK-CDK7 (from iTAK) nucleolus, |
| coexpression network | CFinderM001265 | proteolysis involved in cellular protein catabolic process, proteasome core complex, C3H Transcription_Regulator(from PlantTFDB) Proteasome Oxidative_phosphorylation endopeptidase activity, threonine-type endopeptidase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02953.14 | zf-Tim10_DDP | 57 | 115 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.