PH01003483G0210's details annotation
1.Annotation
ICBR annotation: OsTIL-2 Temperature-induced lipocalin-2, expressed
Blast result AT5G58070 : 7.90E-76
Blast annotation: temperature-induced lipocalin
2.Location
Scaffold: PH01003483
Strand: -
| Region | Start | End |
| gene | 134490 | 139266 |
| mRNA | 134490 | 139266 |
| exon | 134490 | 137159 |
| exon | 137256 | 139266 |
| CDS | 136977 | 137159 |
| CDS | 137256 | 137612 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000258 | cellular protein modification process, protein neddylation, phosphopyruvate hydratase complex, NF-YB Transcription_Regulator(from PlantTFDB) PLATZ Transcription_Regulator(from iTAK) RLK-Pelle_LRR-VI-2 (from iTAK) |
| coexpression network | CFinderM000395 | NAC Transcription_Regulator(from PlantTFDB) regulation of transcription, DNA-dependent, |
| coexpression network | CFinderM001538 | oligopeptide transport, transporter activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08212.11 | Lipocalin_2 | 7 | 154 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005215 | transporter activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.