PH01003484G0150's details annotation
1.Annotation
ICBR annotation: erythronate-4-phosphate dehydrogenase domain containing protein
Blast result AT1G12550 : 1.10E-86
Blast annotation: D-isomer specific 2-hydroxyacid dehydrogenase family protein
2.Location
Scaffold: PH01003484
Strand: +
| Region | Start | End |
| gene | 111922 | 116428 |
| mRNA | 111922 | 116428 |
| exon | 111922 | 112496 |
| exon | 114295 | 114804 |
| exon | 115035 | 116428 |
| CDS | 112029 | 112496 |
| CDS | 114295 | 114804 |
| CDS | 115035 | 115577 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00389.29 | 2-Hacid_dh | 70 | 327 |
| PF02826.18 | 2-Hacid_dh_C | 123 | 296 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008152 | metabolic process |
| GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
| GO:0048037 | cofactor binding |
| GO:0051287 | NAD binding |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.