PH01003491G0050's details annotation
1.Annotation
ICBR annotation: beta-D-xylosidase, putative, expressed
Blast result AT5G64570 : 0.00E+00
Blast annotation: beta-D-xylosidase 4
2.Location
Scaffold: PH01003491
Strand: +
| Region | Start | End |
| gene | 47572 | 55124 |
| mRNA | 47572 | 55124 |
| exon | 47572 | 48231 |
| exon | 50685 | 50972 |
| exon | 52182 | 52351 |
| exon | 52628 | 52725 |
| exon | 53607 | 53954 |
| exon | 54046 | 54462 |
| exon | 54546 | 55124 |
| CDS | 47833 | 48231 |
| CDS | 50685 | 50972 |
| CDS | 52182 | 52351 |
| CDS | 52628 | 52725 |
| CDS | 53607 | 53954 |
| CDS | 54046 | 54462 |
| CDS | 54546 | 55117 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Glycoside_Hydrolases | GH3 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00933.20 | Glyco_hydro_3 | 109 | 351 |
| PF01915.21 | Glyco_hydro_3_C | 397 | 627 |
| PF14310.5 | Fn3-like | 688 | 754 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Starch and sucrose metabolism | beta-D-xylosidase 4 [EC:3.2.1.37] | ko00500 | K15920 |
| Amino sugar and nucleotide sugar metabolism | beta-D-xylosidase 4 [EC:3.2.1.37] | ko00520 | K15920 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.