PH01003495G0070's details annotation
1.Annotation
ICBR annotation: protein binding protein, putative
Blast result AT5G04460 : 9.00E-101
Blast annotation: RING/U-box superfamily protein
2.Location
Scaffold: PH01003495
Strand: -
| Region | Start | End |
| gene | 23416 | 28726 |
| mRNA | 23416 | 28726 |
| exon | 23416 | 23515 |
| exon | 23808 | 23898 |
| exon | 24009 | 24111 |
| exon | 24201 | 24366 |
| exon | 24498 | 24807 |
| exon | 24884 | 25492 |
| exon | 25794 | 25912 |
| exon | 27210 | 28726 |
| CDS | 23498 | 23515 |
| CDS | 23808 | 23898 |
| CDS | 24009 | 24111 |
| CDS | 24201 | 24366 |
| CDS | 24498 | 24807 |
| CDS | 24884 | 25492 |
| CDS | 25794 | 25912 |
| CDS | 27210 | 28016 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13920.5 | zf-C3HC4_3 | 688 | 733 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.