PH01003499G0050's details annotation
1.Annotation
ICBR annotation: FAD-binding and arabino-lactone oxidase domains containing protein, putative, expressed
Blast result AT5G11540 : 6.00E-169
Blast annotation: D-arabinono-1,4-lactone oxidase family protein
2.Location
Scaffold: PH01003499
Strand: -
| Region | Start | End |
| gene | 20502 | 24569 |
| mRNA | 20502 | 24569 |
| exon | 20502 | 21396 |
| exon | 21452 | 21750 |
| exon | 23509 | 24569 |
| CDS | 20598 | 21396 |
| CDS | 21452 | 21750 |
| CDS | 23509 | 23955 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01565.22 | FAD_binding_4 | 25 | 117 |
| PF04030.13 | ALO | 361 | 459 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0003885 | D-arabinono-1,4-lactone oxidase activity |
| GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
| GO:0016020 | membrane |
| GO:0016491 | oxidoreductase activity |
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.