PH01003547G0120's details annotation
1.Annotation
ICBR annotation: isochorismatase family protein, putative, expressed
Blast result AT3G16190 : 2.20E-50
Blast annotation: Isochorismatase family protein
2.Location
Scaffold: PH01003547
Strand: -
| Region | Start | End |
| gene | 63088 | 65926 |
| mRNA | 63088 | 65926 |
| exon | 63088 | 63462 |
| exon | 63774 | 64005 |
| exon | 65453 | 65572 |
| exon | 65667 | 65926 |
| CDS | 63335 | 63462 |
| CDS | 63774 | 64005 |
| CDS | 65453 | 65572 |
| CDS | 65667 | 65873 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00857.19 | Isochorismatase | 61 | 224 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0008152 | metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.