PH01003606G0100's details annotation
1.Annotation
ICBR annotation: nifU, putative, expressed
Blast result AT4G25910 : 4.40E-70
Blast annotation: NFU domain protein 3
2.Location
Scaffold: PH01003606
Strand: -
| Region | Start | End |
| gene | 35197 | 36915 |
| mRNA | 35197 | 36915 |
| exon | 35197 | 35539 |
| exon | 35700 | 35989 |
| exon | 36137 | 36224 |
| exon | 36300 | 36915 |
| CDS | 35348 | 35539 |
| CDS | 35700 | 35989 |
| CDS | 36137 | 36224 |
| CDS | 36300 | 36392 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000845 | iron-sulfur cluster assembly, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01106.16 | NifU | 74 | 139 |
| PF01106.16 | NifU | 155 | 217 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005506 | iron ion binding |
| GO:0016226 | iron-sulfur cluster assembly |
| GO:0051536 | iron-sulfur cluster binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.