PH01003644G0180's details annotation
1.Annotation
ICBR annotation: WD domain containing protein, putative, expressed
Blast result AT1G58230 : 0.00E+00
Blast annotation: binding
2.Location
Scaffold: PH01003644
Strand: +
| Region | Start | End |
| gene | 109732 | 112550 |
| mRNA | 109732 | 112550 |
| exon | 109732 | 110114 |
| exon | 110207 | 110332 |
| exon | 110415 | 110786 |
| exon | 110879 | 111110 |
| exon | 111822 | 112550 |
| CDS | 110094 | 110114 |
| CDS | 110207 | 110332 |
| CDS | 110415 | 110786 |
| CDS | 110879 | 111110 |
| CDS | 111822 | 112519 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000952 | glucose-1-phosphate adenylyltransferase activity, vesicle docking involved in exocytosis, glycogen biosynthetic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02138.17 | Beach | 8 | 99 |
| PF00400.31 | WD40 | 234 | 270 |
| PF00400.31 | WD40 | 299 | 332 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.