PH01003662G0020's details annotation
1.Annotation
ICBR annotation: lectin protein kinase family protein, putative, expressed
Blast result AT4G11650 : 5.20E-64
Blast annotation: osmotin 34
2.Location
Scaffold: PH01003662
Strand: +
| Region | Start | End |
| gene | 11636 | 14457 |
| mRNA | 11636 | 14457 |
| exon | 11636 | 13086 |
| exon | 13222 | 13550 |
| exon | 14039 | 14457 |
| CDS | 11920 | 13086 |
| CDS | 13222 | 13550 |
| CDS | 14039 | 14099 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000119 | |
| coexpression network | CFinderM000268 | WRKY Transcription_Regulator(from PlantTFDB) RLK-Pelle_LRR-II (from iTAK) mTERF Transcription_Regulator(from iTAK) RLK-Pelle_SD-2b (from iTAK) RNA-dependent DNA replication, regulation of transcription, DNA-dependent, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00314.16 | Thaumatin | 33 | 227 |
| PF07714.16 | Pkinase_Tyr | 420 | 504 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.