PH01003680G0130's details annotation
1.Annotation
ICBR annotation: acyl-desaturase, chloroplast precursor, putative, expressed
Blast result AT3G02610 : 1.20E-32
Blast annotation: Plant stearoyl-acyl-carrier-protein desaturase family protein
2.Location
Scaffold: PH01003680
Strand: -
| Region | Start | End |
| gene | 89146 | 92402 |
| mRNA | 89146 | 92402 |
| exon | 89146 | 89321 |
| exon | 90215 | 92402 |
| CDS | 89190 | 89321 |
| CDS | 90215 | 90571 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000443 | Isoquinoline_alkaloid_biosynthesis Tyrosine_metabolism RLK-Pelle_RLCK-Os (from iTAK) |
| coexpression network | CFinderM000493 | acyl-[acyl-carrier-protein] desaturase activity, transition metal ion binding, fatty acid metabolic process, Plant_hormone_signal_transduction bZIP Transcription_Regulator(from PlantTFDB) oxidoreductase activity, galactosyltransferase activity, serine-type carboxypeptidase activity, |
| coexpression network | CFinderM000634 | fatty acid metabolic process, lipid transport, lipid binding, transition metal ion binding, acyl-[acyl-carrier-protein] desaturase activity, manganese ion binding, nutrient reservoir activity, apoplast, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03405.13 | FA_desaturase_2 | 2 | 114 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006631 | fatty acid metabolic process |
| GO:0016491 | oxidoreductase activity |
| GO:0045300 | acyl-[acyl-carrier-protein] desaturase activity |
| GO:0046914 | transition metal ion binding |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.