PH01003722G0110's details annotation
1.Annotation
ICBR annotation: SEY1, putative, expressed
Blast result AT3G13870 : 5.00E-122
Blast annotation: Root hair defective 3 GTP-binding protein (RHD3)
2.Location
Scaffold: PH01003722
Strand: +
| Region | Start | End |
| gene | 67015 | 71375 |
| mRNA | 67015 | 71375 |
| exon | 67015 | 67726 |
| exon | 68602 | 68726 |
| exon | 68835 | 69097 |
| exon | 69172 | 69268 |
| exon | 69385 | 69546 |
| exon | 69680 | 69784 |
| exon | 69953 | 70047 |
| exon | 70138 | 70234 |
| exon | 70338 | 71375 |
| CDS | 67660 | 67726 |
| CDS | 68602 | 68726 |
| CDS | 68835 | 69097 |
| CDS | 69172 | 69268 |
| CDS | 69385 | 69546 |
| CDS | 69680 | 69784 |
| CDS | 69953 | 70047 |
| CDS | 70138 | 70234 |
| CDS | 70338 | 70568 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001608 | pyruvate dehydrogenase complex, dihydrolipoyllysine-residue acetyltransferase activity, pyruvate metabolic process, protein processing, small-subunit processome, integral to membrane, transferase activity, transferring acyl groups, mRNA_surveillance_pathway Pyruvate_metabolism Glycolysis_/_Gluconeogenesis Citrate_cycle_(TCA_cycle) |
| coexpression network | CFinderM001617 | Golgi organization, mRNA_surveillance_pathway solute:hydrogen antiporter activity, integral to membrane, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05879.11 | RHD3 | 23 | 381 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.