PH01003755G0130's details annotation
1.Annotation
ICBR annotation: histone acetyltransferase HAC5, putative, expressed
Blast result AT1G79000 : 1.00E-160
Blast annotation: histone acetyltransferase of the CBP family 1
2.Location
Scaffold: PH01003755
Strand: -
| Region | Start | End |
| gene | 110337 | 122798 |
| mRNA | 110337 | 122798 |
| exon | 110337 | 110477 |
| exon | 110593 | 110732 |
| exon | 111754 | 111832 |
| exon | 112176 | 112315 |
| exon | 112397 | 112682 |
| exon | 112769 | 112911 |
| exon | 113018 | 113218 |
| exon | 113338 | 113466 |
| exon | 114161 | 114436 |
| exon | 114519 | 114794 |
| exon | 115032 | 116062 |
| exon | 116149 | 116346 |
| exon | 116516 | 116681 |
| exon | 116990 | 117098 |
| exon | 118043 | 118134 |
| exon | 118767 | 118816 |
| exon | 120011 | 120346 |
| exon | 121881 | 122798 |
| CDS | 110414 | 110477 |
| CDS | 110593 | 110732 |
| CDS | 111754 | 111832 |
| CDS | 112176 | 112315 |
| CDS | 112397 | 112682 |
| CDS | 112769 | 112911 |
| CDS | 113018 | 113218 |
| CDS | 113338 | 113466 |
| CDS | 114161 | 114436 |
| CDS | 114519 | 114794 |
| CDS | 115032 | 116062 |
| CDS | 116149 | 116346 |
| CDS | 116516 | 116681 |
| CDS | 116990 | 117098 |
| CDS | 118043 | 118134 |
| CDS | 118767 | 118816 |
| CDS | 120011 | 120346 |
| CDS | 121881 | 122079 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000041 | Oxidative_phosphorylation respiratory electron transport chain, mitochondrial inner membrane, |
| coexpression network | CFinderM001375 | nucleus, Others Transcription_Regulator(from iTAK) transcription cofactor activity, histone acetyltransferase activity, ubiquitin-dependent protein catabolic process, regulation of transcription, DNA-dependent, ubiquitin thiolesterase activity, |
| coexpression network | CFinderM001694 | TKL_CTR1-DRK-2 (from iTAK) mitochondrial respiratory chain complex IV, mitochondrial inner membrane, Steroid_hormone_biosynthesis Fatty_acid_elongation Biosynthesis_of_unsaturated_fatty_acids cytochrome-c oxidase activity, histone acetyltransferase activity, transcription cofactor activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08214.10 | HAT_KAT11 | 911 | 1127 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003712 | transcription cofactor activity |
| GO:0004402 | histone acetyltransferase activity |
| GO:0005515 | protein binding |
| GO:0005634 | nucleus |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.