PH01003786G0070's details annotation
1.Annotation
ICBR annotation: autophagy-related protein, putative, expressed
Blast result AT1G62040 : 5.00E-58
Blast annotation: Ubiquitin-like superfamily protein
2.Location
Scaffold: PH01003786
Strand: +
| Region | Start | End |
| gene | 38216 | 42430 |
| mRNA | 38216 | 42430 |
| exon | 38216 | 38989 |
| exon | 39972 | 40027 |
| exon | 40110 | 40162 |
| exon | 40626 | 40744 |
| exon | 40843 | 42430 |
| CDS | 38953 | 38989 |
| CDS | 39972 | 40027 |
| CDS | 40110 | 40162 |
| CDS | 40626 | 40744 |
| CDS | 40843 | 40937 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02991.15 | Atg8 | 14 | 117 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Regulation of autophagy | GABA(A) receptor-associated protein (autophagy-related protein 8) | K08341 |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.