Gene details

Annotation of co-expression genes

PH01003793G0230's details annotation

1.Annotation

ICBR annotation: 40S ribosomal protein S23, putative, expressed

Blast result AT5G02960 : 2.50E-74
Blast annotation: Ribosomal protein S12/S23 family protein

2.Location

Scaffold: PH01003793
Strand: -

3.Network

Co-expression Network Category	Global Network	Conditional Network
Co-expression Positive	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Co-expression Negative	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Predict protein-portein interaction	null
miRNA-targets relationship	null

4.Functional module

Method	Module ID	Function Annotation
coexpression network	CFinderM000175	Ribosome translation, Ribosome small ribosomal subunit, structural constituent of ribosome, intracellular, eukaryotic translation elongation factor 1 complex, translational elongation, translation elongation factor activity,

5.Cis-elements

6.Expression profilings

7.Gene family

Category	Family
null	null

8.Protein domain

Pfam Accession	Pfam Annotation	Alignment Start	Alignment Start
PF00164.24	Ribosom_S12_S23	59	169

9.KEGG Pathway

Pathway	KEGG Ortholog	Pathway ID	KO
Ribosome	small subunit ribosomal protein S23e	ko03011	K02973

10.Gene Ontology

GO Accession	GO Annotation
GO:0003735	structural constituent of ribosome
GO:0005622	intracellular
GO:0005840	ribosome
GO:0006412	translation
GO:0015935	small ribosomal subunit

      Maintained by Xuelian Ma  - Zhen Su's Lab -  China Agricultural University

    © 2017 All Rights Reserved.