PH01003847G0090's details annotation
1.Annotation
ICBR annotation: NLI interacting factor-like phosphatase, putative, expressed
Blast result AT2G33540 : 0.00E+00
Blast annotation: C-terminal domain phosphatase-like 3
2.Location
Scaffold: PH01003847
Strand: -
| Region | Start | End |
| gene | 87717 | 94869 |
| mRNA | 87717 | 94869 |
| exon | 87717 | 89286 |
| exon | 89374 | 89464 |
| exon | 89572 | 89840 |
| exon | 89960 | 90106 |
| exon | 90187 | 90792 |
| exon | 91066 | 91296 |
| exon | 91414 | 92496 |
| exon | 92588 | 92648 |
| exon | 92745 | 92800 |
| exon | 92877 | 93015 |
| exon | 93111 | 94869 |
| CDS | 88978 | 89286 |
| CDS | 89374 | 89464 |
| CDS | 89572 | 89840 |
| CDS | 89960 | 90106 |
| CDS | 90187 | 90792 |
| CDS | 91066 | 91296 |
| CDS | 91414 | 92496 |
| CDS | 92588 | 92648 |
| CDS | 92745 | 92800 |
| CDS | 92877 | 93015 |
| CDS | 93111 | 93763 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03031.17 | NIF | 928 | 1082 |
| PF12738.6 | PTCB-BRCT | 1164 | 1214 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004721 | phosphoprotein phosphatase activity |
| GO:0005515 | protein binding |
| GO:0005634 | nucleus |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.