PH01003871G0100's details annotation
1.Annotation
ICBR annotation: polygalacturonase, putative, expressed
Blast result AT4G33440 : 3.00E-161
Blast annotation: Pectin lyase-like superfamily protein
2.Location
Scaffold: PH01003871
Strand: -
| Region | Start | End |
| gene | 70623 | 75725 |
| mRNA | 70623 | 75725 |
| exon | 70623 | 71988 |
| exon | 72311 | 72381 |
| exon | 72492 | 72666 |
| exon | 72850 | 72970 |
| exon | 74237 | 75725 |
| CDS | 71354 | 71988 |
| CDS | 72311 | 72381 |
| CDS | 72492 | 72666 |
| CDS | 72850 | 72970 |
| CDS | 74237 | 74686 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Glycoside_Hydrolases | GH28 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00295.16 | Glyco_hydro_28 | 178 | 456 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.