Annotation of co-expression genes

PH01003879G0070's details annotation

1.Annotation

ICBR annotation: TKL_IRAK_DUF26-lc.6 - DUF26 kinases have homology to DUF26 containing loci, expressed

Blast result AT4G23180 : 6.60E-79
Blast annotation: cysteine-rich RLK (RECEPTOR-like protein kinase) 10

2.Location

Scaffold: PH01003879
Strand: +

RegionStartEnd
gene3867943038
mRNA3867943038
exon3867938995
exon3938739854
exon4028040450
exon4078940919
exon4126541331
exon4204142278
exon4239542545
exon4263143038
CDS3879438995
CDS3938739854
CDS4028040450
CDS4078940919
CDS4126541331
CDS4204142278
CDS4239542545
CDS4263142960

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00188.25CAP76197
PF00069.24Pkinase358527

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0005524ATP binding
GO:0005576extracellular region
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.