PH01003887G0030's details annotation
1.Annotation
ICBR annotation: fasciclin-like arabinogalactan protein 8 precursor, putative, expressed
Blast result AT4G12730 : 1.20E-85
Blast annotation: FASCICLIN-like arabinogalactan 2
2.Location
Scaffold: PH01003887
Strand: -
| Region | Start | End |
| gene | 22763 | 27517 |
| mRNA | 22763 | 27517 |
| exon | 22763 | 24023 |
| exon | 26053 | 27517 |
| CDS | 23172 | 24023 |
| CDS | 26053 | 26409 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001096 | RLK-Pelle_LRR-VI-2 (from iTAK) Flavone_and_flavonol_biosynthesis Mismatch_repair Nucleotide_excision_repair Homologous_recombination DNA_replication regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity DNA_replication |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02469.21 | Fasciclin | 41 | 134 |
| PF02469.21 | Fasciclin | 203 | 334 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.