PH01003994G0140's details annotation
1.Annotation
ICBR annotation: prenyltransferase, putative, expressed
Blast result AT2G44520 : 1.40E-90
Blast annotation: cytochrome c oxidase 10
2.Location
Scaffold: PH01003994
Strand: -
| Region | Start | End |
| gene | 73604 | 78114 |
| mRNA | 73604 | 78114 |
| exon | 73604 | 74443 |
| exon | 74537 | 74640 |
| exon | 74757 | 74882 |
| exon | 75758 | 75891 |
| exon | 76018 | 76155 |
| exon | 76977 | 78114 |
| CDS | 74052 | 74443 |
| CDS | 74537 | 74640 |
| CDS | 74757 | 74882 |
| CDS | 75758 | 75891 |
| CDS | 76018 | 76155 |
| CDS | 76977 | 77267 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000560 | heme O biosynthetic process, DDT Transcription_Regulator(from iTAK) RWP-RK Transcription_Regulator(from iTAK) Nin-like Transcription_Regulator(from PlantTFDB) protoheme IX farnesyltransferase activity, prenyltransferase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01040.17 | UbiA | 97 | 304 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004659 | prenyltransferase activity |
| GO:0008495 | protoheme IX farnesyltransferase activity |
| GO:0016021 | integral to membrane |
| GO:0048034 | heme O biosynthetic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.