Annotation of co-expression genes

PH01003996G0070's details annotation

1.Annotation

ICBR annotation: protein kinase domain containing protein, expressed

Blast result AT4G23220 : 3.80E-35
Blast annotation: cysteine-rich RLK (RECEPTOR-like protein kinase) 14

2.Location

Scaffold: PH01003996
Strand: +

RegionStartEnd
gene2928434113
mRNA2928434113
exon2928430616
exon3073430892
exon3112031304
exon3141831541
exon3162031868
exon3193732038
exon3226232398
exon3248734113
CDS3045530616
CDS3073430892
CDS3112031304
CDS3141831541
CDS3162031868
CDS3193732038
CDS3226232398
CDS3248732904

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000319nucleoside_diphosphate_phosphorylation
carbohydrate phosphorylation,
histone_H4_acetylation
UTP biosynthetic process,
CTP biosynthetic process,
histone_H2A_acetylation
GTP biosynthetic process,
aromatic amino acid family metabolic process,
chromatin remodeling,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00069.24Pkinase102262
PF14299.5PP2343508

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.