PH01004010G0130's details annotation
1.Annotation
ICBR annotation: BRCA1 C Terminus domain containing protein, expressed
Blast result AT1G80420 : 9.80E-57
Blast annotation: BRCT domain-containing DNA repair protein
2.Location
Scaffold: PH01004010
Strand: +
| Region | Start | End |
| gene | 108985 | 114728 |
| mRNA | 108985 | 114728 |
| exon | 108985 | 109668 |
| exon | 109758 | 109946 |
| exon | 111185 | 111314 |
| exon | 111827 | 111900 |
| exon | 112220 | 112303 |
| exon | 113260 | 113346 |
| exon | 113701 | 114728 |
| CDS | 109504 | 109668 |
| CDS | 109758 | 109946 |
| CDS | 111185 | 111314 |
| CDS | 111827 | 111900 |
| CDS | 112220 | 112303 |
| CDS | 113260 | 113346 |
| CDS | 113701 | 114030 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001364 | DNA replication factor C complex, pyrimidine nucleotide biosynthetic process, DNA clamp loader activity, DNA_replication CTP synthase activity, Nucleotide_excision_repair Mismatch_repair DNA_replication Base_excision_repair |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12738.6 | PTCB-BRCT | 60 | 106 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Base excision repair | DNA-repair protein XRCC1 | ko03410 | K10803 |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.