PH01004031G0050's details annotation
1.Annotation
ICBR annotation: hypothetical_protein
Blast result AT1G77170 : 5.00E-107
Blast annotation: Tetratricopeptide repeat (TPR)-like superfamily protein
2.Location
Scaffold: PH01004031
Strand: -
| Region | Start | End |
| gene | 26035 | 29388 |
| mRNA | 26035 | 29388 |
| exon | 26035 | 28398 |
| exon | 28882 | 29239 |
| exon | 29299 | 29388 |
| CDS | 27124 | 28398 |
| CDS | 28882 | 29239 |
| CDS | 29299 | 29336 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF10604.8 | Polyketide_cyc2 | 13 | 129 |
| PF01535.19 | PPR | 248 | 269 |
| PF13041.5 | PPR_2 | 277 | 321 |
| PF13041.5 | PPR_2 | 377 | 424 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.