Annotation of co-expression genes

PH01004031G0090's details annotation

1.Annotation

ICBR annotation: ABC-2 type transporter, putative, expressed

Blast result AT1G59870 : 0
Blast annotation: ABC-2 and Plant PDR ABC-type transporter family protein

2.Location

Scaffold: PH01004031
Strand: -

RegionStartEnd
gene4772163965
mRNA4772163965
exon4772148595
exon4869748951
exon4915249253
exon4939649651
exon4992550058
exon5024750330
exon5395454130
exon5536555655
exon5575855964
exon5619156523
exon5794558108
exon5823758380
exon5855658706
exon5905159160
exon5958959749
exon5985060166
exon6037060651
exon6327363965
CDS4832648595
CDS4869748951
CDS4915249253
CDS4939649651
CDS4992550058
CDS5024750330
CDS5395454130
CDS5536555655
CDS5575855964
CDS5619156523
CDS5794558108
CDS5823758380
CDS5855658706
CDS5905159160
CDS5958959749
CDS5985060166
CDS6037060651
CDS6327363554

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01061.23ABC2_membrane163374
PF08370.10PDR_assoc380442
PF00005.26ABC_tran553704
PF00005.26ABC_tran720773
PF01061.23ABC2_membrane9781177

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0005524ATP binding
GO:0016020membrane
GO:0016887ATPase activity
GO:0017111nucleoside-triphosphatase activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.