PH01004147G0020's details annotation
1.Annotation
ICBR annotation: peroxidase precursor, putative, expressed
Blast result AT4G37530 : 4.10E-79
Blast annotation: Peroxidase superfamily protein
2.Location
Scaffold: PH01004147
Strand: -
| Region | Start | End |
| gene | 6839 | 8385 |
| mRNA | 6839 | 8385 |
| exon | 6839 | 7483 |
| exon | 7601 | 7766 |
| exon | 7850 | 8041 |
| exon | 8158 | 8385 |
| CDS | 7080 | 7483 |
| CDS | 7601 | 7766 |
| CDS | 7850 | 8041 |
| CDS | 8158 | 8361 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00141.22 | peroxidase | 43 | 284 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004601 | peroxidase activity |
| GO:0006979 | response to oxidative stress |
| GO:0020037 | heme binding |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.