PH01004169G0100's details annotation
1.Annotation
ICBR annotation: CAMK_CAMK_like.19 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
Blast result AT1G78290 : 8.00E-141
Blast annotation: Protein kinase superfamily protein
2.Location
Scaffold: PH01004169
Strand: +
| Region | Start | End |
| gene | 71815 | 77678 |
| mRNA | 71815 | 77678 |
| exon | 71815 | 72845 |
| exon | 74213 | 74287 |
| exon | 75566 | 75667 |
| exon | 75891 | 75983 |
| exon | 76069 | 76161 |
| exon | 76450 | 76548 |
| exon | 76637 | 77678 |
| CDS | 72726 | 72845 |
| CDS | 74213 | 74287 |
| CDS | 75566 | 75667 |
| CDS | 75891 | 75983 |
| CDS | 76069 | 76161 |
| CDS | 76450 | 76548 |
| CDS | 76637 | 76924 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00069.24 | Pkinase | 4 | 260 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Plant hormone signal transduction | serine/threonine-protein kinase SRK2 [EC:2.7.11.1] | ko04075 | K14498 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0004674 | protein serine/threonine kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.