PH01004184G0060's details annotation
1.Annotation
ICBR annotation: polyprenyl synthetase, putative, expressed
Blast result AT5G47770 : 5.50E-31
Blast annotation: farnesyl diphosphate synthase 1
2.Location
Scaffold: PH01004184
Strand: -
| Region | Start | End |
| gene | 41060 | 44598 |
| mRNA | 41060 | 44598 |
| exon | 41060 | 41760 |
| exon | 41834 | 41878 |
| exon | 41953 | 42046 |
| exon | 42577 | 42665 |
| exon | 42752 | 42868 |
| exon | 43772 | 44598 |
| CDS | 41686 | 41760 |
| CDS | 41834 | 41878 |
| CDS | 41953 | 42046 |
| CDS | 42577 | 42665 |
| CDS | 42752 | 42868 |
| CDS | 43772 | 44164 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00348.16 | polyprenyl_synt | 127 | 268 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008299 | isoprenoid biosynthetic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.