Annotation of co-expression genes

PH01004235G0060's details annotation

1.Annotation

ICBR annotation: calmodulin-binding transcription activator, putative, expressed

Blast result AT5G09410 : 4.00E-110
Blast annotation: ethylene induced calmodulin binding protein

2.Location

Scaffold: PH01004235
Strand: -

RegionStartEnd
gene7570982374
mRNA7570982374
exon7570976096
exon7624176796
exon7706177860
exon7813478261
exon7838678851
exon7917579220
exon8106581153
exon8137981494
exon8160281727
exon8227882374
CDS7572876096
CDS7624176796
CDS7706177860
CDS7813478261
CDS7838678851
CDS7917579220
CDS8106581153
CDS8137981494
CDS8160281727
CDS8227882290

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)CAMTA
Transcription_Regulator(from PlantTFDB)CAMTA

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF03859.15CG-115127
PF01833.23TIG313389
PF13637.5Ank_4551603
PF00612.26IQ750770
PF00612.26IQ776793

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003677DNA binding
GO:0005515protein binding
GO:0005634nucleus

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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