PH01004300G0100's details annotation
1.Annotation
ICBR annotation: sec8 exocyst complex component specific domain containing protein, expressed
Blast result AT3G10380 : 5.60E-77
Blast annotation: subunit of exocyst complex 8
2.Location
Scaffold: PH01004300
Strand: +
| Region | Start | End |
| gene | 64836 | 76451 |
| mRNA | 64836 | 76451 |
| exon | 64836 | 65020 |
| exon | 65933 | 65952 |
| exon | 65991 | 66091 |
| exon | 67471 | 67583 |
| exon | 67673 | 67722 |
| exon | 68181 | 68367 |
| exon | 71961 | 72152 |
| exon | 73229 | 73441 |
| exon | 73788 | 73873 |
| exon | 74203 | 74398 |
| exon | 74497 | 74574 |
| exon | 75364 | 75465 |
| exon | 75578 | 75652 |
| exon | 75810 | 75905 |
| exon | 76113 | 76451 |
| CDS | 64943 | 65020 |
| CDS | 65933 | 65952 |
| CDS | 65991 | 66091 |
| CDS | 67471 | 67583 |
| CDS | 67673 | 67722 |
| CDS | 68181 | 68367 |
| CDS | 71961 | 72152 |
| CDS | 73229 | 73441 |
| CDS | 73788 | 73873 |
| CDS | 74203 | 74398 |
| CDS | 74497 | 74574 |
| CDS | 75364 | 75465 |
| CDS | 75578 | 75652 |
| CDS | 75810 | 75905 |
| CDS | 76113 | 76148 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000283 | serine-type peptidase activity, |
| coexpression network | CFinderM000716 | Golgi apparatus, clathrin adaptor complex, membrane coat, chromatin binding, |
| coexpression network | CFinderM001066 | mitochondrial proton-transporting ATP synthase complex, catalytic core F(1), vesicle docking, ATP metabolic process, ATP_catabolic_process ATP biosynthetic process, proton transport, exocytosis, |
| coexpression network | CFinderM001189 | GT31 GlycosylTransferases RNA processing, protein glycosylation, Fructose_and_mannose_metabolism mRNA_surveillance_pathway Amino_sugar_and_nucleotide_sugar_metabolism galactosyltransferase activity, transferase activity, |
| coexpression network | CFinderM001398 | cis-Golgi network, vesicle docking involved in exocytosis, exocyst, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.