PH01004328G0020's details annotation
1.Annotation
ICBR annotation: heat shock protein, putative, expressed
Blast result AT3G07770 : 0.00E+00
Blast annotation: HEAT SHOCK PROTEIN 89.1
2.Location
Scaffold: PH01004328
Strand: +
| Region | Start | End |
| gene | 18950 | 26523 |
| mRNA | 18950 | 26523 |
| exon | 18950 | 19227 |
| exon | 19754 | 19957 |
| exon | 20050 | 20123 |
| exon | 20349 | 20474 |
| exon | 20561 | 20654 |
| exon | 20748 | 20831 |
| exon | 20964 | 21107 |
| exon | 21195 | 21308 |
| exon | 21386 | 21448 |
| exon | 21561 | 21635 |
| exon | 21761 | 21943 |
| exon | 22646 | 22777 |
| exon | 22878 | 22970 |
| exon | 23079 | 23156 |
| exon | 23246 | 23500 |
| exon | 24064 | 24166 |
| exon | 24503 | 24677 |
| exon | 24764 | 24869 |
| exon | 25183 | 25272 |
| exon | 25979 | 26523 |
| CDS | 19120 | 19227 |
| CDS | 19754 | 19957 |
| CDS | 20050 | 20123 |
| CDS | 20349 | 20474 |
| CDS | 20561 | 20654 |
| CDS | 20748 | 20831 |
| CDS | 20964 | 21107 |
| CDS | 21195 | 21308 |
| CDS | 21386 | 21448 |
| CDS | 21561 | 21635 |
| CDS | 21761 | 21943 |
| CDS | 22646 | 22777 |
| CDS | 22878 | 22970 |
| CDS | 23079 | 23156 |
| CDS | 23246 | 23500 |
| CDS | 24064 | 24166 |
| CDS | 24503 | 24677 |
| CDS | 24764 | 24869 |
| CDS | 25183 | 25272 |
| CDS | 25979 | 26158 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02518.25 | HATPase_c | 119 | 279 |
| PF00183.17 | HSP90 | 284 | 380 |
| PF00183.17 | HSP90 | 389 | 796 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Protein processing in endoplasmic reticulum | heat shock protein 90kDa beta | ko04141 | K09487 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005524 | ATP binding |
| GO:0006457 | protein folding |
| GO:0006950 | response to stress |
| GO:0051082 | unfolded protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.