PH01004427G0040's details annotation
1.Annotation
ICBR annotation: transporter family protein, putative, expressed
Blast result AT1G54730 : 2.00E-114
Blast annotation: Major facilitator superfamily protein
2.Location
Scaffold: PH01004427
Strand: -
| Region | Start | End |
| gene | 16127 | 20933 |
| mRNA | 16127 | 20933 |
| exon | 16127 | 16329 |
| exon | 16476 | 16590 |
| exon | 16720 | 16779 |
| exon | 16883 | 16936 |
| exon | 17028 | 17213 |
| exon | 17291 | 17337 |
| exon | 17465 | 17549 |
| exon | 17628 | 17708 |
| exon | 17797 | 17889 |
| exon | 18327 | 18368 |
| exon | 18749 | 18814 |
| exon | 19328 | 19417 |
| exon | 19524 | 19586 |
| exon | 19847 | 20933 |
| CDS | 16202 | 16329 |
| CDS | 16476 | 16590 |
| CDS | 16720 | 16779 |
| CDS | 16883 | 16936 |
| CDS | 17028 | 17213 |
| CDS | 17291 | 17337 |
| CDS | 17465 | 17549 |
| CDS | 17628 | 17708 |
| CDS | 17797 | 17889 |
| CDS | 18327 | 18368 |
| CDS | 18749 | 18814 |
| CDS | 19328 | 19417 |
| CDS | 19524 | 19586 |
| CDS | 19847 | 20089 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00083.23 | Sugar_tr | 151 | 442 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005215 | transporter activity |
| GO:0006810 | transport |
| GO:0016020 | membrane |
| GO:0016021 | integral to membrane |
| GO:0022857 | transmembrane transporter activity |
| GO:0022891 | substrate-specific transmembrane transporter activity |
| GO:0055085 | transmembrane transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.