Annotation of co-expression genes

PH01004445G0010's details annotation

1.Annotation

ICBR annotation: protein transporter, putative, expressed

Blast result AT3G20920 : 7.00E-125
Blast annotation: translocation protein-related

2.Location

Scaffold: PH01004445
Strand: +

RegionStartEnd
gene1300721191
mRNA1300721191
exon1300715549
exon1628516602
exon1711717318
exon1919519423
exon2023621191
CDS1545115549
CDS1628516602
CDS1711717318
CDS1919519423
CDS2023620500

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001034STE_STE20-YSK (from iTAK)
protein phosphatase type 2A complex,
glycolipid_6-alpha-mannosyltransferase_activity
GDP-Man:Man1GlcNAc2-PP-Dol_alpha-1,3-mannosyltransferase_activity
C3H Transcription_Regulator(from PlantTFDB)

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF03839.15Sec6297231

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Protein exporttranslocation protein SEC62ko03060K12275
Protein processing in endoplasmic reticulumtranslocation protein SEC62ko04141K12275

10.Gene Ontology

GO AccessionGO Annotation
GO:0008565protein transporter activity
GO:0015031protein transport
GO:0016021integral to membrane

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.