PH01004458G0030's details annotation
1.Annotation
ICBR annotation: phosphoenolpyruvate carboxylase, putative, expressed
Blast result AT1G53310 : 0
Blast annotation: phosphoenolpyruvate carboxylase 1
2.Location
Scaffold: PH01004458
Strand: +
| Region | Start | End |
| gene | 19496 | 24594 |
| mRNA | 19496 | 24594 |
| exon | 19496 | 19834 |
| exon | 19920 | 20142 |
| exon | 20397 | 20500 |
| exon | 20594 | 20681 |
| exon | 21448 | 21602 |
| exon | 21688 | 22686 |
| exon | 23285 | 23671 |
| exon | 24143 | 24594 |
| CDS | 19739 | 19834 |
| CDS | 19920 | 20142 |
| CDS | 20397 | 20500 |
| CDS | 20594 | 20681 |
| CDS | 21448 | 21602 |
| CDS | 21688 | 22686 |
| CDS | 23285 | 23671 |
| CDS | 24143 | 24436 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001199 | proton-transporting two-sector ATPase complex, catalytic domain, proton-transporting ATP synthase complex, catalytic core F(1), CMGC_CDK-PITSLRE (from iTAK) HB-other Transcription_Regulator(from PlantTFDB) C3H Transcription_Regulator(from PlantTFDB) tricarboxylic acid cycle, ATP synthesis coupled proton transport, ATP hydrolysis coupled proton transport, Pyruvate_metabolism Carbon_fixation_pathways_in_prokaryotes Methane_metabolism Carbon_fixation_in_photosynthetic_organisms |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00311.16 | PEPcase | 21 | 781 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Pyruvate metabolism | phosphoenolpyruvate carboxylase [EC:4.1.1.31] | ko00620 | K01595 |
| Carbon fixation in photosynthetic organisms | phosphoenolpyruvate carboxylase [EC:4.1.1.31] | ko00710 | K01595 |
| Carbon fixation pathways in prokaryotes | phosphoenolpyruvate carboxylase [EC:4.1.1.31] | ko00720 | K01595 |
| Methane metabolism | phosphoenolpyruvate carboxylase [EC:4.1.1.31] | ko00680 | K01595 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0006099 | tricarboxylic acid cycle |
| GO:0008964 | phosphoenolpyruvate carboxylase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.