PH01004472G0110's details annotation
1.Annotation
ICBR annotation: nucleotide-sugar transporter family protein, putative, expressed
Blast result AT5G65000 : 8.00E-111
Blast annotation: Nucleotide-sugar transporter family protein
2.Location
Scaffold: PH01004472
Strand: +
| Region | Start | End |
| gene | 85103 | 89804 |
| mRNA | 85103 | 89804 |
| exon | 85103 | 86227 |
| exon | 87829 | 87877 |
| exon | 87951 | 88177 |
| exon | 89253 | 89451 |
| exon | 89526 | 89669 |
| exon | 89719 | 89804 |
| CDS | 86100 | 86227 |
| CDS | 87829 | 87877 |
| CDS | 87951 | 88177 |
| CDS | 89253 | 89451 |
| CDS | 89526 | 89669 |
| CDS | 89719 | 89763 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04142.14 | Nuc_sug_transp | 25 | 316 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000139 | Golgi membrane |
| GO:0005338 | nucleotide-sugar transmembrane transporter activity |
| GO:0005351 | sugar:hydrogen symporter activity |
| GO:0008643 | carbohydrate transport |
| GO:0015780 | nucleotide-sugar transport |
| GO:0016021 | integral to membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.