PH01004477G0090's details annotation
1.Annotation
ICBR annotation: zinc finger family protein, putative, expressed
Blast result AT4G32600 : 9.00E-104
Blast annotation: RING/U-box superfamily protein
2.Location
Scaffold: PH01004477
Strand: -
| Region | Start | End |
| gene | 50611 | 53717 |
| mRNA | 50611 | 53717 |
| exon | 50611 | 51739 |
| exon | 52188 | 52464 |
| exon | 52550 | 52675 |
| exon | 53049 | 53717 |
| CDS | 51515 | 51739 |
| CDS | 52188 | 52464 |
| CDS | 52550 | 52675 |
| CDS | 53049 | 53701 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13639.5 | zf-RING_2 | 354 | 395 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.