PH01004497G0170's details annotation
1.Annotation
ICBR annotation: TLD family protein, putative, expressed
Blast result AT5G39590 : 5.00E-122
Blast annotation: TLD-domain containing nucleolar protein
2.Location
Scaffold: PH01004497
Strand: +
| Region | Start | End |
| gene | 90060 | 94567 |
| mRNA | 90060 | 94567 |
| exon | 90060 | 91819 |
| exon | 92752 | 92804 |
| exon | 92840 | 93075 |
| exon | 93147 | 93346 |
| exon | 93954 | 94079 |
| exon | 94161 | 94567 |
| CDS | 91046 | 91819 |
| CDS | 92752 | 92804 |
| CDS | 92840 | 93075 |
| CDS | 93147 | 93346 |
| CDS | 93954 | 94079 |
| CDS | 94161 | 94259 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07534.15 | TLD | 310 | 476 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.