PH01004511G0050's details annotation
1.Annotation
ICBR annotation: serine palmitoyltransferase 1, putative, expressed
Blast result AT4G36480 : 2.20E-76
Blast annotation: long-chain base1
2.Location
Scaffold: PH01004511
Strand: +
| Region | Start | End |
| gene | 26155 | 29777 |
| mRNA | 26155 | 29777 |
| exon | 26155 | 26982 |
| exon | 27888 | 28028 |
| exon | 28230 | 28325 |
| exon | 28420 | 28561 |
| exon | 28921 | 29048 |
| exon | 29139 | 29777 |
| CDS | 26545 | 26982 |
| CDS | 27888 | 28028 |
| CDS | 28230 | 28325 |
| CDS | 28420 | 28561 |
| CDS | 28921 | 29048 |
| CDS | 29139 | 29303 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00155.20 | Aminotran_1_2 | 148 | 357 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0009058 | biosynthetic process |
| GO:0030170 | pyridoxal phosphate binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.