PH01004538G0120's details annotation
1.Annotation
ICBR annotation: exonuclease, putative, expressed
Blast result AT5G26940 : 9.60E-45
Blast annotation: Polynucleotidyl transferase, ribonuclease H-like superfamily protein
2.Location
Scaffold: PH01004538
Strand: +
| Region | Start | End |
| gene | 82753 | 85969 |
| mRNA | 82753 | 85969 |
| exon | 82753 | 84318 |
| exon | 84718 | 84923 |
| exon | 85476 | 85969 |
| CDS | 83852 | 84318 |
| CDS | 84718 | 84923 |
| CDS | 85476 | 85672 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00929.23 | RNase_T | 92 | 261 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0004527 | exonuclease activity |
| GO:0005622 | intracellular |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.