Annotation of co-expression genes

PH01004568G0120's details annotation

1.Annotation

ICBR annotation: male sterility protein, putative, expressed

Blast result AT4G33790 : 4.00E-128
Blast annotation: Jojoba acyl CoA reductase-related male sterility protein

2.Location

Scaffold: PH01004568
Strand: +

RegionStartEnd
gene5663062972
mRNA5663062972
exon5663056850
exon5725257355
exon5842658625
exon6093961039
exon6112361315
exon6145761618
exon6191462058
exon6213962408
exon6251062637
exon6272962972
CDS5677256850
CDS5725257355
CDS5842658625
CDS6093961039
CDS6112361315
CDS6145761618
CDS6191462058
CDS6213962408
CDS6251062637
CDS6272962885

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF07993.11NAD_binding_417338
PF03015.18Sterile412512

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
85 Cutin, suberine and wax biosynthesisfatty acyl-CoA reductase [EC:1.2.1.-]K13356
Peroxisomefatty acyl-CoA reductase [EC:1.2.1.-]ko04146K13356

10.Gene Ontology

GO AccessionGO Annotation
GO:0080019fatty-acyl-CoA reductase (alcohol-forming) activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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