PH01004603G0020's details annotation
1.Annotation
ICBR annotation: RGH1A, putative, expressed
Blast result AT3G46730 : 6.10E-76
Blast annotation: NB-ARC domain-containing disease resistance protein
2.Location
Scaffold: PH01004603
Strand: +
| Region | Start | End |
| gene | 6146 | 15133 |
| mRNA | 6146 | 15133 |
| exon | 6146 | 10081 |
| exon | 11016 | 13233 |
| exon | 13332 | 13587 |
| exon | 13670 | 13895 |
| exon | 14005 | 14155 |
| exon | 14252 | 15133 |
| CDS | 8988 | 10081 |
| CDS | 11016 | 13233 |
| CDS | 13332 | 13587 |
| CDS | 13670 | 13895 |
| CDS | 14005 | 14155 |
| CDS | 14252 | 14473 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00931.21 | NB-ARC | 271 | 549 |
| PF00069.24 | Pkinase | 1089 | 1366 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0004674 | protein serine/threonine kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0006952 | defense response |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
| GO:0043531 | ADP binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.