PH01004609G0080's details annotation
1.Annotation
ICBR annotation: OTU-like cysteine protease family protein, putative, expressed
Blast result AT2G27350 : 4.80E-98
Blast annotation: OTU-like cysteine protease family protein
2.Location
Scaffold: PH01004609
Strand: -
| Region | Start | End |
| gene | 47794 | 52840 |
| mRNA | 47794 | 52840 |
| exon | 47794 | 48175 |
| exon | 48264 | 48426 |
| exon | 48535 | 48600 |
| exon | 48732 | 48790 |
| exon | 48974 | 49052 |
| exon | 49677 | 49754 |
| exon | 51024 | 51185 |
| exon | 51821 | 52840 |
| CDS | 47925 | 48175 |
| CDS | 48264 | 48426 |
| CDS | 48535 | 48600 |
| CDS | 48732 | 48790 |
| CDS | 48974 | 49052 |
| CDS | 49677 | 49754 |
| CDS | 51024 | 51185 |
| CDS | 51821 | 52210 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02338.18 | OTU | 154 | 234 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.