PH01004630G0050's details annotation
1.Annotation
ICBR annotation: polyprenyl synthetase, putative, expressed
Blast result AT2G34630 : 9.00E-74
Blast annotation: geranyl diphosphate synthase 1
2.Location
Scaffold: PH01004630
Strand: +
| Region | Start | End |
| gene | 36300 | 41718 |
| mRNA | 36300 | 41718 |
| exon | 36300 | 37629 |
| exon | 38335 | 38420 |
| exon | 38573 | 38705 |
| exon | 38811 | 38900 |
| exon | 39564 | 39633 |
| exon | 40102 | 40148 |
| exon | 40836 | 40934 |
| exon | 41395 | 41718 |
| CDS | 37516 | 37629 |
| CDS | 38335 | 38420 |
| CDS | 38573 | 38705 |
| CDS | 38811 | 38900 |
| CDS | 39564 | 39633 |
| CDS | 40102 | 40148 |
| CDS | 40836 | 40934 |
| CDS | 41395 | 41574 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00348.16 | polyprenyl_synt | 35 | 157 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008299 | isoprenoid biosynthetic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.