PH01004640G0010's details annotation
1.Annotation
ICBR annotation: PPR repeat domain containing protein, putative, expressed
Blast result AT1G52640 : 4.00E-108
Blast annotation: Pentatricopeptide repeat (PPR) superfamily protein
2.Location
Scaffold: PH01004640
Strand: +
| Region | Start | End |
| gene | 6446 | 12154 |
| mRNA | 6446 | 12154 |
| exon | 6446 | 8358 |
| exon | 9073 | 9126 |
| exon | 9418 | 9491 |
| exon | 9781 | 9804 |
| exon | 10107 | 10209 |
| exon | 11092 | 12154 |
| CDS | 6846 | 8358 |
| CDS | 9073 | 9126 |
| CDS | 9418 | 9491 |
| CDS | 9781 | 9804 |
| CDS | 10107 | 10209 |
| CDS | 11092 | 11210 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01535.19 | PPR | 151 | 176 |
| PF13041.5 | PPR_2 | 215 | 260 |
| PF13041.5 | PPR_2 | 318 | 367 |
| PF13041.5 | PPR_2 | 388 | 435 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.