Annotation of co-expression genes

PH01004640G0020's details annotation

1.Annotation

ICBR annotation: enolase, putative, expressed

Blast result AT1G74030 : 0.00E+00
Blast annotation: enolase 1

2.Location

Scaffold: PH01004640
Strand: +

RegionStartEnd
gene1739421783
mRNA1739421783
exon1739417832
exon1987020177
exon2038420538
exon2062720944
exon2120621352
exon2164621783
CDS1744117832
CDS1987020177
CDS2038420538
CDS2062720944
CDS2120621352
CDS2164621711

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000910translation,
phosphopyruvate hydratase complex,
Ribosome
intracellular,
small ribosomal subunit,
phosphopyruvate hydratase activity,
structural constituent of ribosome,
glycolysis,
Methane_metabolism
RNA_degradation
Glycolysis_/_Gluconeogenesis

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF03952.15Enolase_N51180
PF00113.21Enolase_C189476

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Glycolysis / Gluconeogenesisenolase [EC:4.2.1.11]ko00010K01689
Methane metabolismenolase [EC:4.2.1.11]ko00680K01689
RNA degradationenolase [EC:4.2.1.11]ko03018K01689

10.Gene Ontology

GO AccessionGO Annotation
GO:0000015phosphopyruvate hydratase complex
GO:0000287magnesium ion binding
GO:0004634phosphopyruvate hydratase activity
GO:0006096glycolysis

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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